Reading from loki.opt
Reading from loki.dat
Reading from loki.nrm
Reading from loki.gen
Total (genome) map length set to (4,4)cM
getseed(): Using stored state for mt19937b generator
Map range for linkage group 'chromosome 1' set to 0-2cM
Analysis = 0
Retrieving program state: [Parameters] [Genotypes] [Residuals] [Seed] [Time] OK
Output format: 3
Model: Y = ID' + QTL
Input map function: Haldane
Output map function: Haldane
Linkage groups:
  1: chromosome 1  Map range:  (0cM to 2cM) 
    MARK1 - 0
    MARK2 - 2
Total Map Length: 4cM
Output columns:
  1: Iteration count
  2: Residual variance
  3: Total genetic variance
  4: Additive variance
 covariate data:
  5: Grand mean
 QTL data blocks:
  linkage group
  [position if linked]
  freq. 1
  effect 1,2
  effect 2,2
  size
Number of QTL: 0 to 16
Tau Mode: 0
Tau Beta: 0.53895
No. fixed output columns: 5
SI_mode: 0
No. genetic groups: 1
--------------------
205 0.193206 0.169782 0.169782 1.08493
210 0.664774 0.150739 0.150739 0.336991
215 0.868315 0.697422 0.697422 0.270985 0 0.891447 0.661511 -0.524144 0
220 0.409277 0.180405 0.180405 1.59329
225 0.779721 0.576977 0.576977 1.00257
230 0.144203 0.494425 0.285191 1.50322 1 0.709517 0.64696 -0.619354 0.358367 0.457421
235 0.41783 0.4107 0.268817 0.737347 0 0.387736 -0.551236 -0.881747 0.341668 1 0.54558 0.691771 0.32755 -0.182367 0.158575
240 0.450311 0.750414 0.71262 2.1021 1 1.38436 0.56968 -0.070809 0.0923019 0.0815554 1 1.00347 0.121328 -0.705065 -0.0368887 0 1 1.171 0.0478777 0.938833 -0.470648 0 1 0.811188 0.0425642 0.527864 -1.18983 0 1 0.777797 0.540164 0.498952 0.629812 0.176473
245 0.809258 1.0256 1.0256 2.10594 1 0.947287 0.859578 -0.758132 -0.963384 0 0 0.261049 -0.276165 0.0280506 0 0 0.811934 0.678625 -0.0289267 0 1 0.0276239 0.933904 -0.251042 0.0531318 0
250 0.421734 1.11527 0.650059 3.1496 1 0.0652043 0.29614 -0.787885 0.805027 0.682065 0 0.897879 -0.693297 -0.440514 0 1 1.07895 0.110316 1.28678 -1.31057 0
255 0.866513 0.873029 0.510129 0.732493 0 0.454842 0.259391 -0.137544 0.153014 1 1.50077 0.728523 -0.80743 -0.418286 0.390895 1 1.41393 0.681643 0.277739 1.0652 0.340982 1 1.92351 0.668249 -0.530728 -0.487745 0.265364
260 0.34381 0.837776 0.694744 0.101558 1 0.340023 0.658892 -0.571567 -2.047 0.276708 1 1.88756 0.154625 0.627142 0.529531 0 1 0.761878 0.28089 0.592535 0.322599 0.130683 1 1.56943 0.727381 0.513236 0.879804 0.222231
265 0.382487 3.80207 3.29476 0.678621 1 1.49328 0.554715 0.0999409 1.36861 0.64755 1 1.30025 0.888307 1.14359 0.195701 0 0 0.755293 0.671818 0.219956 0.296623
270 0.373418 0.30876 0.30876 1.29845
275 0.420488 0.439113 0.176872 0.898556 1 0.467958 0.0102203 1.36989 0.21401 0.500511 0 0.280925 -0.978137 -1.13115 0 1 0.323823 0.526862 1.21849 0.994775 0.108303
280 0.109286 0.712573 0.444217 1.08015 1 1.83461 0.630352 0.671051 -0.17565 0.409908 0 0.87053 -0.957766 -0.271662 0.316751
285 0.25097 0.754254 0.714981 1.29421 0 0.910575 -0.59922 -1.13018 0.198174
290 0.517742 0.878697 0.878697 1.3544 0 0.0531584 1.7265 -0.486375 0
295 0.579329 0.434776 0.434776 1.24663
300 0.201505 1.07488 1.02566 1.37828 1 1.12251 0.466976 0.1471 -0.354617 0.221847 1 0.161211 0.0177402 -1.49893 -0.221589 0
Dumping program state: [Parameters] [Genotypes] [Residuals] [Seed] [Time] OK
201 0.241324 0.318335 0.318335 1.37056
202 0.275646 0.327005 0.327005 0.889649
203 0.343176 0.18826 0.18826 1.49314
204 0.460949 0.160601 0.160601 0.784623
205 0.193206 0.169782 0.169782 1.08493
206 0.301689 0.146734 0.146734 1.2639
207 0.407401 0.252832 0.252832 0.719113
208 1.47363 0.160332 0.160332 0.10129
209 0.811345 0.152987 0.152987 0.656866
210 0.664774 0.150739 0.150739 0.336991
211 0.318209 0.120611 0.120611 0.732906 0 0.170856 -1.03742 -0.0558735 0
212 0.353229 0.200842 0.167657 -0.153209 0 0.348656 0.403724 0.954549 0.182168
213 1.1832 0.399207 0.399207 0.282995 0 0.0687514 -0.9982 0.393468 0
214 0.307437 0.376548 0.376548 1.1712 0 0.979171 -0.738034 0.00668937 0
215 0.868315 0.697422 0.697422 0.270985 0 0.891447 0.661511 -0.524144 0
216 1.30095 0.866569 0.823908 -0.170273 0 0.15186 -0.289616 0.334923 0.206547
217 0.469019 0.615474 0.612227 0.51477 0 0.883803 0.113969 0.885449 0.0569844
218 0.419958 0.566098 0.566098 0.662882
219 0.213888 0.735418 0.60253 0.912766 1 0.484171 0.310308 0.204479 -0.548506 0.364537
220 0.409277 0.180405 0.180405 1.59329
221 0.889448 0.209639 0.209639 1.56387
222 0.793906 0.134766 0.134766 0.434541
223 0.709604 0.141 0.141 1.14175
224 0.247571 0.445852 0.445852 0.928065
225 0.779721 0.576977 0.576977 1.00257
226 0.64076 0.418457 0.418457 1.35777
227 0.152906 0.936075 0.936075 0.502177
228 0.245872 0.694973 0.694973 0.846772
229 1.19377 0.50219 0.50219 1.12378
230 0.144203 0.494425 0.285191 1.50322 1 0.709517 0.64696 -0.619354 0.358367 0.457421
231 0.214891 0.293158 0.283443 1.03805 1 1.78669 0.584367 0.295726 0.499324 0.0985663
232 0.185499 0.586087 0.32949 0.681341 1 0.757823 0.785577 1.15911 0.210739 0.506554
233 0.632478 1.21694 0.880376 1.48764 1 1.78709 0.696456 0.316607 -1.14353 0.580141
234 0.497727 0.438936 0.411217 0.8624 0 0.524213 -0.288247 0.137295 0.166489
235 0.41783 0.4107 0.268817 0.737347 0 0.387736 -0.551236 -0.881747 0.341668 1 0.54558 0.691771 0.32755 -0.182367 0.158575
236 0.359104 0.33772 0.33385 1.29293 1 0.499416 0.350245 -0.143661 -0.932197 0.062207 1 1.26737 0.955492 -0.171386 0.299798 0 1 1.08259 0.793567 -0.92837 0.731408 0
237 0.529106 0.359981 0.277846 -0.342873 1 0.219308 0.443342 0.0847207 0.659246 0.278141 1 1.82695 0.954516 -0.407848 -0.0533671 0 1 0.817238 0.175134 0.806409 1.01531 0.0690868
238 0.327478 0.728883 0.244957 -0.444416 1 0.785963 0.701888 0.130415 -0.717414 0.410454 1 1.53747 0.117053 0.232301 1.28669 0 1 1.48128 0.60327 0.662594 0.411862 0.309624 1 1.40458 0.364556 0.214399 1.58471 0.468601
239 0.653444 0.514126 0.466599 1.71861 1 0.471808 0.372689 -0.116954 -0.0228008 0.0455816 1 1.49821 0.0010916 -0.263786 -0.832042 0 1 1.65503 0.935226 -1.54426 0.843427 0 1 0.581797 0.632666 0.461806 -0.166811 0.152728 1 0.0637867 0.345266 0.286001 -0.0212349 0.14874
240 0.450311 0.750414 0.71262 2.1021 1 1.38436 0.56968 -0.070809 0.0923019 0.0815554 1 1.00347 0.121328 -0.705065 -0.0368887 0 1 1.171 0.0478777 0.938833 -0.470648 0 1 0.811188 0.0425642 0.527864 -1.18983 0 1 0.777797 0.540164 0.498952 0.629812 0.176473
241 0.355731 0.647122 0.568053 2.16513 0 0.699586 -0.354737 0.186105 0.171736 1 0.795645 0.00467443 -0.97498 -0.106693 0 1 1.34246 0.0174635 -0.072282 -0.00847367 0 1 0.417943 0.022276 0.0226609 -0.274595 0 1 1.25201 0.79777 -0.514203 -0.082389 0.222656
242 0.68179 0.535694 0.500889 0.865844 0 0.6189 0.430839 -0.638592 0.186559 1 1.78889 0.982799 0.322277 -0.5635 0 1 0.701472 0.21342 1.16781 0.238263 0 0 0.951468 0.418882 0.609581 0
243 0.179761 0.91967 0.5014 0.536195 0 0.251492 0.326421 1.1655 0.406219 1 0.483999 0.108665 -0.337576 -0.239503 0 1 1.16128 0.0112522 0.713871 -0.554819 0 0 0.0239594 1.06848 1.03694 0 0 0.149808 0.258024 -0.904169 0.503245
244 1.46063 0.972964 0.589742 1.51992 1 0.333799 0.118345 -0.824388 0.419003 0.576809 1 1.81268 0.980503 0.312561 -0.328838 0 0 0.0173446 0.0612861 -0.728723 0 0 0.898957 0.519045 -2.8631 0.224753
245 0.809258 1.0256 1.0256 2.10594 1 0.947287 0.859578 -0.758132 -0.963384 0 0 0.261049 -0.276165 0.0280506 0 0 0.811934 0.678625 -0.0289267 0 1 0.0276239 0.933904 -0.251042 0.0531318 0
246 0.340939 0.954713 0.704493 1.32723 1 1.58755 0.926025 0.59064 -0.560491 0.255754 0 0.933716 -0.0265448 0.331536 0.00877886 0 0.898346 -0.265641 0.424263 0 1 0.0293566 0.101303 0.0282857 -1.27132 0.429805
247 0.304058 0.954345 0.644262 0.477194 0 0.295592 0.125889 -1.06058 0.498243 0 0.415705 0.101711 0.615138 0 0 0.0745137 0.803659 0.597087 0 1 0.342134 0.172585 -0.822514 -0.070604 0.248671
248 0.528715 0.902102 0.570407 1.26263 0 0.729909 1.15036 0.737662 0.498118 0 0.599978 0.874127 0.291943 0.28909 0 0.122407 0.606088 -0.715837 0 1 1.67859 0.742256 1.05072 0.536673 0
249 0.302731 0.605321 0.375548 -1.34036 0 0.508989 0.167619 0.519261 0.170238 0 0.324875 0.889739 -0.00858964 0.448098 0 0.0177917 0.33163 0.367376 0 1 0.62568 0.0679402 -0.19218 0.374841 0
250 0.421734 1.11527 0.650059 3.1496 1 0.0652043 0.29614 -0.787885 0.805027 0.682065 0 0.897879 -0.693297 -0.440514 0 1 1.07895 0.110316 1.28678 -1.31057 0
251 0.141717 1.35611 0.766808 0.255449 0 0.66224 -1.50785 0.555866 0.767468 1 0.823668 0.535386 0.60891 0.648554 0.0171665 0 0.888667 -0.0980502 -1.08694 0 1 1.47364 0.987742 -1.01002 -1.61845 0
252 0.254195 0.819388 0.336484 1.00612 1 0.256883 0.636405 -0.790968 0.618219 0.500091 1 1.04932 0.543818 -0.851028 -0.768948 0.412002 0 0.676097 -0.75935 -0.414853 0.251131 1 1.64444 0.959532 0.335598 1.09283 0
253 0.13544 0.464196 0.439763 1.75539 1 0.57448 0.463269 -0.188106 0.0163883 0.0944535 1 0.894231 0.398992 -0.509197 -0.408184 0.0437398 1 1.54676 0.84981 -0.0232804 -0.33067 0 1 1.64444 0.167631 0.073717 -0.278874 0.116608
254 0.273594 0.606278 0.398219 0.396957 1 0.0544656 0.470127 -0.790051 -0.747153 0.374543 1 0.996452 0.329322 0.442162 0.956831 0.249163 1 0.788936 0.820873 -0.168252 -0.113652 0.0728553 1 1.70801 0.793807 -0.059414 1.0625 0.0196493
255 0.866513 0.873029 0.510129 0.732493 0 0.454842 0.259391 -0.137544 0.153014 1 1.50077 0.728523 -0.80743 -0.418286 0.390895 1 1.41393 0.681643 0.277739 1.0652 0.340982 1 1.92351 0.668249 -0.530728 -0.487745 0.265364
256 1.36704 1.32541 0.74891 1.74482 1 0.994303 0.45971 0.370682 -0.211597 0.235172 1 0.783733 0.914767 0.558703 1.32944 0.270481 1 1.76555 0.257345 -1.34607 -0.108123 0.633353 0 0.620651 0.619603 0.341064 0.213894 1 1.8366 0.256555 -0.00281669 0.0657639 0.0339492
257 0.678663 0.797135 0.447257 -0.0650504 0 0.744845 0.978323 0.364816 0.489162 1 1.03329 0.166324 0.100169 0.382182 0 1 1.7916 0.598398 -0.436743 0.646027 0.211437 0 0.641611 -0.439946 -0.475194 0.196118 1 1.8366 0.435107 0.10446 0.523746 0.165623
258 0.718884 1.08587 0.677171 1.06428 0 0.747369 0.707895 0.0219714 0.342708 1 1.01353 0.0376707 -0.38278 -0.24211 0.046522 1 1.41147 0.464683 0.403861 0.0128118 0.197165 1 1.66824 0.344151 -0.568017 0.531851 0.472296 1 1.58963 0.405569 -0.498225 -0.337295 0.164772
259 0.358399 1.10924 0.955715 2.57757 0 0.337833 -0.263046 -1.00868 0.293329 1 1.23705 0.935685 -0.544968 -0.0627512 0 1 1.38062 0.641625 0.075908 0.579108 0.0251042 1 1.64185 0.680004 -0.610056 -0.122954 0.239522 1 1.38527 0.441497 -0.208574 -0.0812869 0.0973614
260 0.34381 0.837776 0.694744 0.101558 1 0.340023 0.658892 -0.571567 -2.047 0.276708 1 1.88756 0.154625 0.627142 0.529531 0 1 0.761878 0.28089 0.592535 0.322599 0.130683 1 1.56943 0.727381 0.513236 0.879804 0.222231
261 0.610176 1.06869 0.991039 1.75131 1 0.294897 0.766288 -0.40368 -1.2103 0.174799 1 0.811935 0.680177 0.4358 0.323573 0.210981 1 0.981882 0.953748 0.104913 -0.541474 0.0507907
262 0.396884 2.22199 2.15456 0.611252 1 0.386593 0.701661 0.0816301 -0.413191 0.239554 1 0.286099 0.292064 0.349348 0.652306 0.100194
263 0.276864 3.09729 2.64266 -1.13568 1 0.557233 0.574251 0.564778 -0.791809 0.525513 1 1.2532 0.936576 -0.486049 0.389035 0 0 0.623101 0.975606 0.025208 0.42245
264 0.437486 5.00105 4.08305 3.37406 1 0.596589 0.283449 0.603094 0.0189099 0.285921 1 1.34186 0.922625 -1.43699 -0.355758 0 0 0.295137 -0.25806 1.8538 0.914464
265 0.382487 3.80207 3.29476 0.678621 1 1.49328 0.554715 0.0999409 1.36861 0.64755 1 1.30025 0.888307 1.14359 0.195701 0 0 0.755293 0.671818 0.219956 0.296623
266 0.36524 3.56906 2.74511 0.68543 1 0.166661 0.585763 -0.600991 0.644216 0.622603 1 0.588742 0.287361 0.987795 -0.176851 0.385171 1 1.99823 0.441479 0.685961 -0.422471 0.536617
267 0.263558 1.12822 1.10934 2.93158 1 0.166661 0.4836 0.0748056 0.797178 0.0374028 1 0.689122 0.125326 0.474859 -1.98985 0 1 1.07575 0.395412 -0.273122 -1.0054 0.132225
268 0.604958 0.63943 0.553291 0.778465 1 0.808672 0.168709 0.0774162 -0.528825 0.293495 1 0.546364 0.202016 0.457357 -0.298588 0
269 0.513936 0.312677 0.296871 0.623718 1 1.45602 0.454918 0.843997 0.463845 0.125723
270 0.373418 0.30876 0.30876 1.29845
271 0.505585 0.523031 0.368066 -0.0385795 1 0.762787 0.0867696 0.908703 1.69601 0.393656
272 0.242951 0.891226 0.891226 1.54408 1 1.65807 0.943188 -0.218527 1.26632 0 1 0.260682 0.994604 1.52009 -0.181883 0
273 0.235127 0.345868 0.33414 2.92232 0 0.955052 -0.327464 0.39079 0.108299 1 0.0621171 0.0253 0.427197 -1.54659 0
274 0.307129 0.116869 0.116604 1.86579 1 0.413506 0.183182 0.647019 -0.397377 0 0 0.847169 0.37763 -0.116836 0 1 0.543956 0.702391 -0.0492489 -0.566974 0.0162875
275 0.420488 0.439113 0.176872 0.898556 1 0.467958 0.0102203 1.36989 0.21401 0.500511 0 0.280925 -0.978137 -1.13115 0 1 0.323823 0.526862 1.21849 0.994775 0.108303
276 0.231694 0.223731 0.197889 1.53582 1 1.2779 0.118805 -1.13736 -0.456244 0 1 0.0715307 0.602183 -0.158352 0.234331 0.160753
277 0.360144 0.561262 0.204799 1.53439 1 1.38103 0.0259572 -0.0335467 0.061376 0.0411027 1 1.3725 0.497715 -0.603243 1.19685 0.595629
278 0.53234 1.01409 0.853831 1.55978 1 1.0859 0.151352 -0.453453 0.419046 0.288552 1 1.3725 0.360505 -1.01223 -0.439051 0.277487
279 0.588572 0.9666 0.924155 0.581403 0 0.554913 -0.167544 -0.560493 0.20602
280 0.109286 0.712573 0.444217 1.08015 1 1.83461 0.630352 0.671051 -0.17565 0.409908 0 0.87053 -0.957766 -0.271662 0.316751
281 0.189347 0.988549 0.764555 1.797 1 0.964383 0.946647 -0.829679 0.715386 0.401666 0 0.786189 0.756883 0.591866 0.250316
282 0.314762 0.905052 0.786108 2.58077 1 0.703046 0.814683 -1.04282 0.609962 0.344882 0 0.00435758 0.00901128 -1.09081 0
283 0.420032 0.939439 0.883234 0.749548 1 1.13375 0.243813 -0.526775 0.0207241 0.237074 0 0.927045 -0.982877 0.762358 0
284 0.48414 0.572331 0.554421 0.2923 1 0.224734 0.775669 -0.404659 0.124714 0.133828 0 0.81599 -0.461271 0.120794 0
285 0.25097 0.754254 0.714981 1.29421 0 0.910575 -0.59922 -1.13018 0.198174
286 0.357614 0.571972 0.551737 0.252743 0 0.429839 0.0421857 0.472308 0.14225
287 1.32579 0.675168 0.472454 0.382004 0 0.339146 0.509104 1.43911 0.450239
288 0.670531 0.937038 0.780693 2.26177 1 1.31074 0.660913 -1.02197 -0.283023 0.395405
289 0.418656 0.89068 0.737379 -0.162864 0 0.474867 0.615733 0.814866 0.222791 1 1.83526 0.093094 0.828292 0.184351 0.32197
290 0.517742 0.878697 0.878697 1.3544 0 0.0531584 1.7265 -0.486375 0
291 0.304196 0.656467 0.656467 0.970995 0 0.913377 -0.698845 0.0287376 0
292 0.792542 0.183851 0.183851 0.968905
293 0.387171 0.418265 0.397143 1.51062 1 0.924297 0.928149 -0.335632 -0.820221 0.145333
294 0.607319 0.595794 0.595794 1.90895
295 0.579329 0.434776 0.434776 1.24663
296 0.218078 0.716068 0.716068 0.314671
297 0.170449 0.818046 0.818046 1.17772
298 0.813935 2.03425 1.86089 0.585085 1 1.77068 0.585882 0.860032 0.502173 0.416361
299 0.423594 1.7149 1.67627 2.14656 1 0.614172 0.544203 -0.168169 0.282112 0.196532 1 0.960079 0.964447 -0.940009 1.10522 0
300 0.201505 1.07488 1.02566 1.37828 1 1.12251 0.466976 0.1471 -0.354617 0.221847 1 0.161211 0.0177402 -1.49893 -0.221589 0
