#!/bin/sh -e

pkg=chromhmm

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi

cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP

cd $AUTOPKGTEST_TMP

CHROMHMM_TEST='java -mx1600M -jar /usr/share/java/chromhmm.jar'

# Just print the version
$CHROMHMM_TEST Version

# Example from ChromHMM website
# java -mx1600M -jar ChromHMM.jar LearnModel SAMPLEDATA_HG18 OUTPUTSAMPLE 10 hg18 
$CHROMHMM_TEST LearnModel SAMPLEDATA_HG18 OUTPUTSAMPLE 10 hg18

