#!/bin/sh
# autopkgtest check: build and run with default test data
# Author: Tatiana Malygina <merlettaia@gmail.com>

set -e

pkg=predictnls

if [ "$ADTTMP" = "" ] ; then
  ADTTMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
fi

cd $ADTTMP

cp -a /usr/share/doc/${pkg}/examples/* .
find . -type f -name "*.gz" -exec gunzip \{\} \;
for lnk in `find . -type l -name "*.gz"` ; do
    ln -s `basename $(readlink $lnk) .gz` `echo $lnk | sed 's/\.gz$//'`
    rm $lnk
done

predictnls fileIn=O49931.fa fileOut=O49931.nls
