46e82b2d91117386fc64b2d7171927c0 *DESCRIPTION
c07885762a7717267140c88cc2f55d6f *NAMESPACE
e8b11d5011af52e5ebf319c3acb0bec9 *R/ComBat.R
90a2713746f4ab84d5c355912e43cd10 *R/ComBat_seq.R
07b665bcc25b084836bcb92c0c575875 *R/empirical.controls.R
469ece46c1757e635dd2c04da557c3f9 *R/f.pvalue.R
c4978e63e3f9f30a9911327ec002eca8 *R/fstats.R
3a9da6795d6a71eaab06a66194d20087 *R/fsva.R
fd3ee0bbcd5027ef21fe45bf128a7478 *R/helper.R
c79424ee48ccd826faf6edc7fb22a1a8 *R/helper_seq.R
0d2b4aef126324aaa25f7c916a31e511 *R/irwsva.build.R
4fb2f9ad2291f757b1417876c9c66117 *R/num.sv.R
9132805db3456277585ca4f9bc62f6ac *R/psva.R
ee6d94c60ac46e121e84f829aca240a0 *R/qsva.R
459f6742025f2349f0e78badb3b2ae9d *R/read.degradation.matrix.R
e940a2a023694fcd8a13dad95134957e *R/ssva.R
643d55482568d9ee270f3b6864ffc59d *R/sva-package.R
155d7388a6cc15b62f6f64fa037b29d8 *R/sva.R
e5e6f63dd7a6f33e27a7f832918de641 *R/sva.check.R
c60d2ad3206ee86c38a402149c22cf6b *R/sva_network.R
b0a389ca928ff983c8d87c964001c459 *R/svaseq.R
32206c4d18d6195d94bc5a0ed44e1d08 *R/twostepsva.build.R
99b4e9b8c1e0eb1637733322655e3980 *build/vignette.rds
0df6c6fa0fd5cb236f244df2395ab6e2 *inst/doc/sva.R
0dae48f50716f62a3ec0a9452faed3ad *inst/doc/sva.Rnw
967db86958bad5b319c4dc4acbb64f2a *inst/doc/sva.pdf
09d2a3024014c88c73401d314e207d33 *inst/extdata/bwtool/SRR595926_degradeStats_polyA.txt
555826983f0c7bfc1892c28231a3e156 *inst/extdata/bwtool/SRR604050_degradeStats_polyA.txt
11e499e53382bda693014d429d196025 *inst/extdata/bwtool/SRR604098_degradeStats_polyA.txt
f4e26a7b7cbdc3fb5da52e9de753082e *inst/extdata/bwtool/SRR607214_degradeStats_polyA.txt
fbba2331eafa1203dea3bcc2420c850e *inst/extdata/bwtool/SRR608456_degradeStats_polyA.txt
29076bc7709aa0f4cd09d5d14223befd *inst/extdata/region_matrix_all/gtex_5sample_region_matrix.txt
98b2290d4aee0c736ab2f736950ac8dc *inst/extdata/region_matrix_one/SRR595926.cov
f84e7d38e8cf87e0ca4c463dc2459eea *inst/extdata/region_matrix_one/SRR604050.cov
6eb2202bb17b25cc8ca46ce3349f5416 *inst/extdata/region_matrix_one/SRR604098.cov
1c1f896ffbdf68c02bd50dc80ef80f14 *inst/extdata/region_matrix_one/SRR607214.cov
efce863b6eacda3e37fe2422af6cc840 *inst/extdata/region_matrix_one/SRR608456.cov
547884c256c563cf1d4febd7e32cef39 *man/ComBat.Rd
b4e04cbd54997fa534834a6e2b66e8b4 *man/ComBat_seq.Rd
ddc7380233881d5323de11014bc82356 *man/empirical.controls.Rd
524b3c425f63a6d291d8b0175571d503 *man/f.pvalue.Rd
618757534df3883d32f8731705531208 *man/fstats.Rd
5948b3900af887e186eee0bd3761c77f *man/fsva.Rd
76e06d1442d0b313f0433d3c88aabd1c *man/irwsva.build.Rd
1f18d272db0f8497a6868373ac965fde *man/num.sv.Rd
c85802e9995a3bc2c406101695d02336 *man/psva.Rd
0c004339891dc5e410329c1df40e7215 *man/qsva.Rd
8fe440b336e5f8d72256c9edb27cd2bb *man/read.degradation.matrix.Rd
7c9db9f485ca6dfd681ffd53f15771d9 *man/ssva.Rd
3296915679e8d8aa5a5c1f15802bbfba *man/sva.Rd
0f5cf1e01bd1b7f1d3f939376985eec9 *man/sva.check.Rd
d4948967307613528f780daa97d9401e *man/sva_network.Rd
ae4c6ba3284bf4c5d9b744b90b8234f0 *man/svaseq.Rd
8b2dc7de31981b505b2f66cbd7ec0eac *man/twostepsva.build.Rd
258b980c630202a5ff0529b4e4054226 *src/sva.c
986ef3b22cdb2acf1458355630cb1339 *tests/testthat.R
f4417355a43b068d4dd565436e69af97 *tests/testthat/test_combat_bladderbatch.R
669c52425d98300ee5040befd1050baa *tests/testthat/test_combat_bladderbatch_parallel.R
f77ac664c815177f751ea93a75fa6703 *tests/testthat/test_combat_errors.R
70852a55df84b083055d4375f8dee601 *tests/testthat/test_combat_sim.R
aebd747b8553a23f6e657bf898631de0 *tests/testthat/test_combatseq.R
0dae48f50716f62a3ec0a9452faed3ad *vignettes/sva.Rnw
71b75d6a98e071d509d171063e7d1c05 *vignettes/sva.bib
