biology/sra-tools - The NetBSD Packages Collection

NCBI's toolkit for handling data in INSDC Sequence Read Archives 

The SRA Toolkit and SDK from NCBI is a collection of tools and
libraries for using data in the INSDC (International Nucleotide
Sequence Database Collaboration) SRA (Sequence Read Archives).  The
SRA house sequence reads and alignments generated by DNA/RNA
sequencers.  The SRA Toolkit facilitates downloading sequence data,
performing filtering and conversions on-the-fly, thus saving enormous
amounts of time, bandwidth, and storage.

Build dependencies

devel/cmake pkgtools/mktools shells/bash devel/bison devel/cmake pkgtools/cwrappers

Runtime dependencies

devel/hdf5 devel/libepoll-shim textproc/libxml2 lang/python312 lang/python312 archivers/zstd devel/hdf5 textproc/libxml2

Binary packages

OSArchitectureVersion
NetBSD 10.0aarch64sra-tools-3.0.6nb3.tgz
NetBSD 10.0aarch64sra-tools-3.0.6nb3.tgz
NetBSD 10.0x86_64sra-tools-3.0.6nb3.tgz
NetBSD 10.0x86_64sra-tools-3.0.6nb3.tgz
NetBSD 9.0aarch64sra-tools-3.0.6nb3.tgz
NetBSD 9.0aarch64sra-tools-3.0.6nb3.tgz
NetBSD 9.0x86_64sra-tools-3.0.6nb3.tgz
NetBSD 9.0x86_64sra-tools-3.0.6nb3.tgz
NetBSD 9.3x86_64sra-tools-3.0.6nb3.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.