biology/bio-mocha - The NetBSD Packages Collection

Bcftools plugin for mosaic chromosomal alteration analysis

MoChA is a bcftools plugin released under the MIT license for mosaic
chromosomal alteration detection and analysis from DNA microarray or
whole genome sequence data. It can be used both with Illumina and
Affymetrix data. It can also be used for detection of germline copy
number variants. Data can be prepared in usable file formats using the
gtc2vcf plugin.

Source version: bio-mocha-1.20
Maintainer:
Website: https://software.broadinstitute.org/software/mocha/
License: mit
Package history: cvs, hg, git

Build dependencies

pkgtools/mktools devel/automake devel/autoconf shells/bash devel/gmake lang/perl5 pkgtools/cwrappers

Runtime dependencies

shells/bash biology/bcftools math/R math/gsl biology/htslib lang/python312 lang/python312 math/R math/gsl

Binary packages

OS	Architecture	Version
(none)

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

(no vulnerabilities known)

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.