biology/rna-seq - The NetBSD Packages Collection

Core tools needed for RNA-Seq analysis 

The rna-seq meta-package provides the core tools needed for performing
a typical RNA-Seq differential gene expression analysis, including
adapter trimming, quality control, alignment, and identification of
differentially expressed genes.  Researchers may want additional tools
for data manipulation, gene ontology, etc.

Build dependencies

pkgtools/mktools pkgtools/cwrappers

Runtime dependencies

biology/sra-tools biology/fastq-trim biology/fastqc biology/biolibc-tools biology/gffread biology/kallisto biology/hisat2 biology/rna-star biology/samtools biology/igv biology/fasda www/webbrowser www/curl archivers/lz4 archivers/xz archivers/zstd lang/python312 lang/python312

Binary packages

OSArchitectureVersion
NetBSD 10.0x86_64rna-seq-1.3.0.tgz
NetBSD 10.0x86_64rna-seq-1.3.0.tgz
NetBSD 9.0x86_64rna-seq-1.3.0.tgz
NetBSD 9.0x86_64rna-seq-1.3.0.tgz
NetBSD 9.3x86_64rna-seq-1.3.0.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.