biology/atac-seq - The NetBSD Packages Collection

Core tools needed for ATAC-Seq analysis

The atac-seq meta-package provides the core tools needed for
performing a typical ATAC-Seq differential accessibility analysis,
including adapter trimming, quality control, alignment, peak calling,
and identification of differentially accessible peaks.  Researchers
may want additional tools for data manipulation, gene ontology,
etc.

Source version: atac-seq-1.5.0
Maintainer:
Website: none stated
License: none stated
Package history: cvs, hg, git

Build dependencies

pkgtools/mktools pkgtools/cwrappers

Runtime dependencies

biology/sra-tools biology/fastq-trim biology/fastqc biology/biolibc-tools biology/gffread biology/bwa biology/bowtie2 biology/samtools biology/igv biology/py-macs2 biology/py-macs3 biology/fasda biology/peak-classifier www/webbrowser www/curl archivers/lz4 archivers/xz archivers/zstd lang/python312 lang/python312

Binary packages

OS	Architecture	Version
NetBSD 10.0	x86_64	atac-seq-1.5.0.tgz
NetBSD 10.0	x86_64	atac-seq-1.5.0.tgz
NetBSD 9.0	x86_64	atac-seq-1.5.0.tgz
NetBSD 9.0	x86_64	atac-seq-1.5.0.tgz
NetBSD 9.3	x86_64	atac-seq-1.5.0.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

(no vulnerabilities known)

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.