biology/mca-calling - The NetBSD Packages Collection

Core tools for Mosaic Chromosomal Alteration event calling

The mca-calling meta-package provides the core tools needed for
performing a typical mCA (Mosaic Chromosomal Alteration) analysis,
including conversion of SRA VCF files to a format suitable for
haplohseq and MoCha, and haplohseq and MoCha event calling.  The
GWAS analysis that follows is typically done with R-based tools
installed within R.

Source version: mca-calling-0.1.0
Maintainer:
Website: none stated
License: none stated
Package history: cvs, hg, git

Build dependencies

pkgtools/mktools pkgtools/cwrappers

Runtime dependencies

biology/sra-tools biology/bcftools biology/samtools biology/vcf-split biology/ad2vcf biology/vcf2hap biology/haplohseq biology/bio-mocha biology/bedtools lang/mawk www/curl archivers/lz4 archivers/bzip2 archivers/xz archivers/zstd

Binary packages

OS	Architecture	Version
(none)

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

(no vulnerabilities known)

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.